The emergence of resistance to existing antimalarial therapies has escalated the urgency for novel compounds that effectively inhibit Plasmodium falciparum. This comprehensive study explores the antimalarial potential of Geranylated Chalcone, a bioactive compound extracted from Terminalia brownii. The molecular structure of Geranylated Chalcone was generated and optimized using ChemDraw and Spartan14 software, respectively, and evaluated its theoretical bioavailability and toxicity profiles through the SwissADME web platform and ProTox 3.0 tool. Molecular docking studies was performed with AutoDock Vina to assess binding interactions with critical enzymes, including Falcipain-2, Falcipain-3, Plasmepsin-2, and Aminopeptidase. Geranylated Chalcone displayed notable binding affinities ranging from -6.4 to -7.3 kcal/mol, indicating substantial interactions facilitated by hydrogen bonds, van der Waals forces, and pi interactions. Furthermore, the compound demonstrated a favorable drug-likeness profile, adhering to Lipinski's rule of five and exhibiting low toxicity (LD50: 2652mg/kg). These findings substantiate that Geranylated Chalcone serves as a promising candidate for antimalarial drug development, possessing advantageous binding affinities and a multi-target profile. Elucidation of its therapeutic efficacy, in vitro and in vivo studies are essential to validate its potentiality as a groundbreaking antimalarial agent. This research contributes valuable insights into the multifaceted role of natural compounds in combating malaria and the pressing challenge of drug resistance.
Published in | Journal of Drug Design and Medicinal Chemistry (Volume 11, Issue 2) |
DOI | 10.11648/j.jddmc.20251102.12 |
Page(s) | 31-38 |
Creative Commons |
This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited. |
Copyright |
Copyright © The Author(s), 2025. Published by Science Publishing Group |
Geranylated Chalcone, Terminalia brownii, Antimalarial Agents, Molecular Docking, Plasmodium falciparum, Drug-likeness
Enzyme | Gridbox Size | Center | ||||
---|---|---|---|---|---|---|
X | Y | Z | X | Y | Z | |
FP-2 | 27 | 25 | 22 | -8.889 | 15.368 | -38.694 |
FP-3 | 18 | 17 | 14 | 5.96 | -22.35 | 50.07 |
Plm-2 | 13 | 26 | 20 | 16.22 | 6.85 | 27.61 |
AP | 18 | 16 | 30 | 14.164 | 11.384 | 12.55 |
2D- Representation | IUPAC Name |
---|---|
2’,6’,4-trihydroxy-3’-methoxy-4-O-prenyloxy chalcone |
Compound Code | Lipinski’s rule of fiveb | |||||||
---|---|---|---|---|---|---|---|---|
Mol.Wta | HbA | HbD | MLogP | GI | Inference | Predicted LD50 | Toxicity Class | |
T4 | 398.45 | 6 | 3 | 2.25 | High | Pass | 2652mg/kg | 5 |
PDB ID | Ligands | Binding affinity (kcal/mol) | Residues involved in bonded interaction |
---|---|---|---|
6JW9 | E64 | -5.7 | Conventional H-Bond: GLN36, CYS42, GLY83, HIS174, ASN81 Pi-Donor H-Bond: TYR78 Pi-Alkyl: LEU84 Van der Waals: GLY82, GLY40, SER41, TRP43, ASN173, ALA175, ILE85, SER149, LEU172 |
T4 | -6.4 | Conventional H-Bond: GLY83 Carbon H-Bond: TRP43, HIS174 Pi-Sulfur: CYS42 Alkyl: LEU84, LEU172, ILE85 Van der Waals: PHE236, SER149, ASP234, ALA175, ASN173, GLN36, GLY40, ASN81, GLN171, PHE236 | |
3BWK | C1P | -7.0 | Conventional H-Bond: GLN45, TRP215, GLY92, ASN182 Carbon H-Bond: TRP52, GLY91, GLY49, TYR90 Pi-Alkyl: TYR93, ALA161 Amide-Pi Stacked: GLY91 Pi-Sulfur: TRP215 Van der Waals: ASN87, PRO181, SER158, ILE94, ALA184, ALA166, HIS183, CYS51, CYS89 |
T4 | -6.5 | Carbon H-Bond: ASN182 Unfavorable Acceptor-Acceptor: GLY49 Pi-Sulfur: CYS51 Alkyl: ALA184 Pi-Alkyl: HIS183, TRP215, CYS51, ALA184 Van der Waals: ALA166, GLN45, TRP52, ILE94, SER158, GLU243, TYR93, GLY92, GLY91, TYR90 | |
1LF3 | EH5 | -10.1 | Conventional H-Bond: VAL78, SER79, SER218, GLY216, ASP34, ASP214 Carbon H-Bond: GLY36, ILE14, GLY216, Alkyl: VAL78, ILE290, PHE294 Pi-Sigma: VAL78 Pi-Donor H-Bond: TYR192 Pi-Alkyl: ILE32, ILE123 Pi-Pi T-shaped: TYR77 Pi-Sulfur: MET15 Van der Waals: LEU29, ILE300, PHE111, THR114, PHE120, SER37, LEU131, MET75, ASN76, ILE212, ALA219, THR217 |
T4 | -7.3 | Conventional H-Bond: THR217, ASP214, Carbon H-Bond: GLY216 Alkyl: VAL78, ILE32, ILE123 Pi-Anion: ASP214 Pi-Alkyl: TYR77, PHE120, VAL78, LEU292 Van der Waals: PR0295, ASP34, MET15, PHE11, SER79, THR114, GLY36, TYR192, ILE212, ILE300, PHE294 | |
5Y1K | B1B | -8.5 | Conventional H-Bond: ALA320, TYR580, ALA461, GLU463, GLU497 Carbon H-Bond: GLU319, ALA461 Pi-Sigma: MET1034 Pi-Pi Stacked: TYR575 Pi-Alkyl: TYR575, TYR580 Alkyl: ALA320, MET1034, VAL459 Van der Waals: GLU519, HIS490, HIS500, MET462, PHE457, GLN317, GLU572, GLY460 |
T4 | -8.1 | Conventional H-Bond: GLU526 Carbon H-Bond: VAL493, GLU526 Pi-Cation: ARG489 Pi-Pi T-shaped: HIS496, TYR580 Alkyl: VAL523 Pi-Alkyl: TYR580, VAL459 Van der Waals: GLU319, ALA461, GLU497, ASP581, THR577, LEU546, GLY460, TYR575, GLU519, HIS500, GLU463, GLN317, MET462 |
AP | Aminopeptides |
FP | Falcipain |
LD | Limit Dose |
PDB | Protein Data Bank |
2D | Two Dimensional |
3D | Three Dimensional |
SAR | Structural Activity Relationship |
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APA Style
Omolara, T. T., Jimoh, Y., Ayodele, O. A., Sule, M. I. (2025). Computational Insights into the Antimalarial Potential of Geranylated Chalcone from Terminalia brownii: A Multi-target Approach Against Plasmodium Falciparum Enzymes. Journal of Drug Design and Medicinal Chemistry, 11(2), 31-38. https://doi.org/10.11648/j.jddmc.20251102.12
ACS Style
Omolara, T. T.; Jimoh, Y.; Ayodele, O. A.; Sule, M. I. Computational Insights into the Antimalarial Potential of Geranylated Chalcone from Terminalia brownii: A Multi-target Approach Against Plasmodium Falciparum Enzymes. J. Drug Des. Med. Chem. 2025, 11(2), 31-38. doi: 10.11648/j.jddmc.20251102.12
AMA Style
Omolara TT, Jimoh Y, Ayodele OA, Sule MI. Computational Insights into the Antimalarial Potential of Geranylated Chalcone from Terminalia brownii: A Multi-target Approach Against Plasmodium Falciparum Enzymes. J Drug Des Med Chem. 2025;11(2):31-38. doi: 10.11648/j.jddmc.20251102.12
@article{10.11648/j.jddmc.20251102.12, author = {Tijani Tawakaltu Omolara and Yusuf Jimoh and Olaiya Akeem Ayodele and Muhammed Ibrahim Sule}, title = {Computational Insights into the Antimalarial Potential of Geranylated Chalcone from Terminalia brownii: A Multi-target Approach Against Plasmodium Falciparum Enzymes }, journal = {Journal of Drug Design and Medicinal Chemistry}, volume = {11}, number = {2}, pages = {31-38}, doi = {10.11648/j.jddmc.20251102.12}, url = {https://doi.org/10.11648/j.jddmc.20251102.12}, eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.jddmc.20251102.12}, abstract = {The emergence of resistance to existing antimalarial therapies has escalated the urgency for novel compounds that effectively inhibit Plasmodium falciparum. This comprehensive study explores the antimalarial potential of Geranylated Chalcone, a bioactive compound extracted from Terminalia brownii. The molecular structure of Geranylated Chalcone was generated and optimized using ChemDraw and Spartan14 software, respectively, and evaluated its theoretical bioavailability and toxicity profiles through the SwissADME web platform and ProTox 3.0 tool. Molecular docking studies was performed with AutoDock Vina to assess binding interactions with critical enzymes, including Falcipain-2, Falcipain-3, Plasmepsin-2, and Aminopeptidase. Geranylated Chalcone displayed notable binding affinities ranging from -6.4 to -7.3 kcal/mol, indicating substantial interactions facilitated by hydrogen bonds, van der Waals forces, and pi interactions. Furthermore, the compound demonstrated a favorable drug-likeness profile, adhering to Lipinski's rule of five and exhibiting low toxicity (LD50: 2652mg/kg). These findings substantiate that Geranylated Chalcone serves as a promising candidate for antimalarial drug development, possessing advantageous binding affinities and a multi-target profile. Elucidation of its therapeutic efficacy, in vitro and in vivo studies are essential to validate its potentiality as a groundbreaking antimalarial agent. This research contributes valuable insights into the multifaceted role of natural compounds in combating malaria and the pressing challenge of drug resistance.}, year = {2025} }
TY - JOUR T1 - Computational Insights into the Antimalarial Potential of Geranylated Chalcone from Terminalia brownii: A Multi-target Approach Against Plasmodium Falciparum Enzymes AU - Tijani Tawakaltu Omolara AU - Yusuf Jimoh AU - Olaiya Akeem Ayodele AU - Muhammed Ibrahim Sule Y1 - 2025/07/30 PY - 2025 N1 - https://doi.org/10.11648/j.jddmc.20251102.12 DO - 10.11648/j.jddmc.20251102.12 T2 - Journal of Drug Design and Medicinal Chemistry JF - Journal of Drug Design and Medicinal Chemistry JO - Journal of Drug Design and Medicinal Chemistry SP - 31 EP - 38 PB - Science Publishing Group SN - 2472-3576 UR - https://doi.org/10.11648/j.jddmc.20251102.12 AB - The emergence of resistance to existing antimalarial therapies has escalated the urgency for novel compounds that effectively inhibit Plasmodium falciparum. This comprehensive study explores the antimalarial potential of Geranylated Chalcone, a bioactive compound extracted from Terminalia brownii. The molecular structure of Geranylated Chalcone was generated and optimized using ChemDraw and Spartan14 software, respectively, and evaluated its theoretical bioavailability and toxicity profiles through the SwissADME web platform and ProTox 3.0 tool. Molecular docking studies was performed with AutoDock Vina to assess binding interactions with critical enzymes, including Falcipain-2, Falcipain-3, Plasmepsin-2, and Aminopeptidase. Geranylated Chalcone displayed notable binding affinities ranging from -6.4 to -7.3 kcal/mol, indicating substantial interactions facilitated by hydrogen bonds, van der Waals forces, and pi interactions. Furthermore, the compound demonstrated a favorable drug-likeness profile, adhering to Lipinski's rule of five and exhibiting low toxicity (LD50: 2652mg/kg). These findings substantiate that Geranylated Chalcone serves as a promising candidate for antimalarial drug development, possessing advantageous binding affinities and a multi-target profile. Elucidation of its therapeutic efficacy, in vitro and in vivo studies are essential to validate its potentiality as a groundbreaking antimalarial agent. This research contributes valuable insights into the multifaceted role of natural compounds in combating malaria and the pressing challenge of drug resistance. VL - 11 IS - 2 ER -